PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G2208
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 258aa    MW: 30121.1 Da    PI: 6.4081
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G2208genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.92.3e-2578168190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+re++   ++++    + + tr gC a+l++ +++  kw+vtk+++eHnH+l+
  Gh_A07G2208  78 EFYFSYGRHIGFTVRIHHNRRSRINNSVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGVKWVVTKFVKEHNHSLM 168
                  6******************************************99983333.244899********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-2378168IPR004330FAR1 DNA binding domain
Gene3DG3DSA:3.40.50.3005.7E-4175242IPR027417P-loop containing nucleoside triphosphate hydrolase
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MENVSSQGID SDESVRCLQV ENFDEQELVD HGISDNIDLC LGEVDKIIEE SSEGLPLLRN  60
AAEPYIGMEF KSRDAAREFY FSYGRHIGFT VRIHHNRRSR INNSVIGQDF VCSKEGFREK  120
KYMYRKDRVL PPPPITREGC PAMLRLALRD GVKWVVTKFV KEHNHSLMSP GKVPWRGSTK  180
NLITEDEKDQ RIRELTQELN NEKQKCKRRC AAYQEQLRTI LKFVEEHTDQ LSKKVQDIVK  240
NISELEEERL EDSDCRYV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466031.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A0B0NC580.0A0A0B0NC58_G
STRINGPOPTR_0002s24030.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16529711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-37FAR1 family protein