PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0449
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 251aa    MW: 27605.3 Da    PI: 4.8558
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0449genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.14e-56441481102
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdi
  Gh_A07G0449  44 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 141
                  89*****998899************************************************************************************* PP

        NF-YC  96 vprdelk 102
                  vprde+k
  Gh_A07G0449 142 VPRDEIK 148
                  ****975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.04E-3432138IPR009072Histone-fold
PfamPF008081.8E-2066129IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.9E-3767144IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDSNLQTQST PYPPQPPTSA ITPPSSATAT APPFHHLLQQ QQQQLQMFWS YQRQEIEQVN  60
DFKNHQLPLA RIKKIMKADE DVRMISAEAP ILFAKACELF ILELTIRSWL HAEENKRRTL  120
QKNDIAAAIT RTDIFDFLVD IVPRDEIKDE TALAPMVGAT ASGVPYFYPP MGQPAGGGPG  180
GMMIGRPAVD PTGVIYGQPP SQAWQSVWQT AGTDDGSYGS GVTGGQGNLD GQGYVICFLN  240
FENFQFGKIC C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C9e-444514419119HapE
4g92_C9e-444514419119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.98380.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467982.11e-169PREDICTED: nuclear transcription factor Y subunit C-1 isoform X2
RefseqXP_012467991.11e-169PREDICTED: nuclear transcription factor Y subunit C-1 isoform X3
SwissprotQ9SMP01e-106NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A0B0N3P31e-170A0A0B0N3P3_G
STRINGPOPTR_0015s10940.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.11e-88nuclear factor Y, subunit C1