PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1676
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 166aa    MW: 19143.9 Da    PI: 8.0003
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1676genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.22.4e-3714109296
       DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                  C+aCk++rr+C +dC++apyfp+ ++++f+n+hklFG++nv+kl+++l +++++++am+++v e+++ra+dPv G+++vi++lq+q+e+++ael++
  Gh_A06G1676  14 CSACKYQRRRCRADCPFAPYFPHGREQQFKNMHKLFGMNNVIKLIRTLkDPSTKDIAMRTIVVESDMRAKDPVGGCYRVIQELQHQIECKQAELDK 109
                  ************************************************55666****************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.70612114IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-3614109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSISTSGNTE TEDCSACKYQ RRRCRADCPF APYFPHGREQ QFKNMHKLFG MNNVIKLIRT  60
LKDPSTKDIA MRTIVVESDM RAKDPVGGCY RVIQELQHQI ECKQAELDKI YYNIANCRAQ  120
NAHHLQMQKI DDGDHCQMMN KSPLIQFETE KLANLSIKSD DNIGEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-241311411111LOB family transfactor Ramosa2.1
5ly0_B7e-241311411111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721392.11e-124PREDICTED: LOB domain-containing protein 22-like
RefseqXP_017613627.11e-124PREDICTED: LOB domain-containing protein 22-like
SwissprotQ9LRW16e-36LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A1U8M3M31e-122A0A1U8M3M3_GOSHI; LOB domain-containing protein 22-like
STRINGGorai.010G232100.15e-99(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64982645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-38LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]