PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1421
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 185aa    MW: 20572.5 Da    PI: 7.2893
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1421genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.11.3e-4261061100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +Ca+Ck+lrr+Cak+C++apyfp+++p+kf +vhk+FGasnv+k+l++  p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la++
  Gh_A06G1421   6 PCASCKLLRRRCAKGCIFAPYFPSDDPHKFSIVHKVFGASNVSKMLQQElPVQQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSELQMQLAVA 103
                  7*********************************************87538899******************************************99 PP

       DUF260  98 kee 100
                  ++e
  Gh_A06G1421 104 QAE 106
                  987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.7095107IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-426104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGGNSPCASC KLLRRRCAKG CIFAPYFPSD DPHKFSIVHK VFGASNVSKM LQQELPVQQR  60
ADAVSSLVYE ANARVRDPVY GCVGAISFLQ NQVSELQMQL AVAQAEILCI QMQHQVQDPM  120
LQQLPNPTPT TAHGGATASH LLDDQLHYDK PFLLHNHHQF INSTTNVIHD QYSVKRETIF  180
GDMVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4621087112LOB family transfactor Ramosa2.1
5ly0_B2e-4621087112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449047.11e-132PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW31e-68LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2P5XVE71e-131A0A2P5XVE7_GOSBA; Uncharacterized protein
STRINGGorai.010G195100.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.19e-71LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]