PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1223
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 170aa    MW: 18544.2 Da    PI: 7.7553
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1223genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260144.33.7e-45131121100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+ dPvyG+vg i++lqqq++ l+++la+++
  Gh_A06G1223  13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSIVYEANARVCDPVYGCVGAISSLQQQIDALQTQLAMTQ 110
                  7**********************************************************************************************998 PP

       DUF260  99 ee 100
                  +e
  Gh_A06G1223 111 AE 112
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.21912113IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-4513110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MKESGRKQGA ASPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQE  60
LPVHQRGDAV SSIVYEANAR VCDPVYGCVG AISSLQQQID ALQTQLAMTQ AEVVHLRVRQ  120
TASFPHGFCP TSPSNSGSPT FKLMGSQTMP IFDMDMVVDQ ASLGEPMWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-5091257123LOB family transfactor Ramosa2.1
5ly0_B8e-5091257123LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098906390.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3948065e-59GQ394806.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1829 SSR marker DPL0016 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743368.11e-125PREDICTED: LOB domain-containing protein 4-like
RefseqXP_016755415.11e-125PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE93e-81LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A1U8NZ841e-124A0A1U8NZ84_GOSHI; LOB domain-containing protein 4-like
STRINGGorai.010G170700.11e-122(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-83LOB domain-containing protein 4