PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3105
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 173aa    MW: 18943.1 Da    PI: 6.7436
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3105genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.21.7e-4410108199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk lrrkC +dC++apyfp e+p+kf nvhk+FGasnv+kll+++p+++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l++el++++
  Gh_A05G3105  10 PCAACKCLRRKCMPDCIFAPYFPPEEPQKFINVHKIFGASNVSKLLNDVPPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVMRLQKELDATN 107
                  7*********************************************************************************************9987 PP

       DUF260  99 e 99 
                  +
  Gh_A05G3105 108 A 108
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.4279110IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-4410107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MASSSYSNPP CAACKCLRRK CMPDCIFAPY FPPEEPQKFI NVHKIFGASN VSKLLNDVPP  60
HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVMRLQ KELDATNADI IRYAYNEMPQ  120
PPQPPAASQY GGRRTAAGHG SSGGGSFDQN SGFYYPSQWN NNDPSGDNES GSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-641011811119LOB family transfactor Ramosa2.1
5ly0_B4e-641011811119LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5822131e-158JX582213.1 Gossypium hirsutum clone NBRI_GE15003 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458035.11e-127PREDICTED: LOB domain-containing protein 25-like
RefseqXP_012458036.11e-127PREDICTED: LOB domain-containing protein 25-like
RefseqXP_012458037.11e-127PREDICTED: LOB domain-containing protein 25-like
RefseqXP_016679016.11e-127PREDICTED: LOB domain-containing protein 25-like
RefseqXP_016679017.11e-127PREDICTED: LOB domain-containing protein 25-like
RefseqXP_017614825.11e-127PREDICTED: LOB domain-containing protein 25-like
RefseqXP_017614826.11e-127PREDICTED: LOB domain-containing protein 25-like
SwissprotQ8L8Q38e-66LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A0D2RYJ31e-126A0A0D2RYJ3_GOSRA; Uncharacterized protein
TrEMBLA0A1U8ILK51e-126A0A1U8ILK5_GOSHI; LOB domain-containing protein 25-like
TrEMBLA0A2P5XNB61e-126A0A2P5XNB6_GOSBA; Uncharacterized protein
STRINGGorai.012G063800.11e-127(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-67LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]