PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2343
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 422aa    MW: 44812.3 Da    PI: 7.2629
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2343genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.76e-4097186292
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                  +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++   +
  Gh_A05G2343  97 PAAKRPTKDRHTKVDGRGRRIRMPAVCAARVFQLTQELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTISAP--PS 186
                  6789*****************************************************************9997777777777743333..22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.443103157IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-37103201IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MQIMESQSNK SSNSSEHHHH HHGQKQEASL QLVSRDGQPQ AAAGAAHGTS HQAQAQTQTQ  60
AQPQAPGHHV SFMGSISNQI GVPSSSPTST SSLAKPPAAK RPTKDRHTKV DGRGRRIRMP  120
AVCAARVFQL TQELGHKSDG ETIEWLLQQA EPAIIAATGT GTIPANFSTL NVSLRSSGST  180
ISAPPSKSAP LSFHSALGFY NSNGDEARRI GNSTAMLGFH HQLYPQLLNP ETHIRSGGNP  240
NDNYATKPFR DDLFKETSQH NTETGAIDAN SPKPERTGMP EQEPGLFQTT NVMPAPAMWA  300
VAPATTNGGN AFWMLPVGGG ATAASATVPE AQMWTFPAHY SGGGRGNPVQ LGSMILQQQQ  360
AGGQQLGLGV TETNMGLLGS GMNVYSNNNR VGLKMNLEQQ HHHENQTQGS DSGDENPATD  420
SQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.102690.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5252791e-153HQ525279.1 Gossypium herbaceum clone NBRI_A2_462 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748489.10.0PREDICTED: transcription factor TCP23-like
SwissprotQ9LQF02e-83TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A1U8PDY00.0A0A1U8PDY0_GOSHI; transcription factor TCP23-like
STRINGGorai.009G289000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.16e-69TCP family protein