PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1015
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 151aa    MW: 17000.3 Da    PI: 8.6032
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1015genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.62.7e-4051041100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaC++lrr+C++dC+l+pyfp+++p++fa vh+++Gasnv+kll++lp++ r++a++sl++eA++r++dPvyG+vg+i+ lqqq+++++++l +++
  Gh_A05G1015   5 RCAACRYLRRRCTQDCFLSPYFPSNNPQRFASVHRIYGASNVTKLLQRLPTHLRSEAADSLYFEAQCRLEDPVYGCVGLIFLLQQQIHSAESQLIKTQ 102
                  6********************************************************************************************99998 PP

       DUF260  99 ee 100
                  +e
  Gh_A05G1015 103 AE 104
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.4534105IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-405102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSSGRCAACR YLRRRCTQDC FLSPYFPSNN PQRFASVHRI YGASNVTKLL QRLPTHLRSE  60
AADSLYFEAQ CRLEDPVYGC VGLIFLLQQQ IHSAESQLIK TQAEIAVMKS QTQHPQTQPF  120
RAISGSNNLL LQQSDNDANL IFSNQVSSGF I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3721058111LOB family transfactor Ramosa2.1
5ly0_B1e-3721058111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5960921e-74JX596092.1 Gossypium hirsutum clone NBRI_GE32583 microsatellite sequence.
GenBankJX6074011e-74JX607401.1 Gossypium hirsutum clone NBRI_GE47812 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016749729.11e-109PREDICTED: LOB domain-containing protein 24-like
SwissprotP594687e-52LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A1U8PHQ51e-107A0A1U8PHQ5_GOSHI; LOB domain-containing protein 24-like
STRINGGorai.009G123600.11e-103(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.19e-44LOB domain-containing protein 24