PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 487aa    MW: 51025.9 Da    PI: 7.9564
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1120genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.42.1e-411252302113
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                  +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++          
  Gh_A04G1120 125 PPAKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphsfh 222
                  5789*****************************************************************99988888888888555543333333333 PP

          TCP  89 ..kaaksaakskksqksaasalnlake 113
                                        +la +
  Gh_A04G1120 223 gaL-------------------ALASH 230
                  331...................33332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-38130232IPR005333Transcription factor, TCP
PROSITE profilePS5136928.542131185IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MELTYSQNNK QTNNNTNLVS SDGTTTTSSA PSSTSNNNNS PFNITSISHL HRRLLHPTTS  60
STATVITTAT PPLSSSSSSS SSTTKTNPAQ PVDASLAIAT RSSASLNIDD STKKNQPNLP  120
PSSNPPAKRS TKDRHTKVDG RGRRIRMPAA CAARVFQLTR ELGHKSDGET IEWLLQQAEP  180
AIIAATGTGT IPANFSTLNV SLRSSGSTLS APPSKSAPHS FHGALALASH HHPYEEGFAH  240
SALFGLHHHQ QQLLRADQIA ETLPAGGGGS GGCGNSSENY MRKRFREDLF KDDNQQQGET  300
GGGGGSGDGD SGGDGSSIKA FKTGLPQLHK PSNILPATAM WAVAPAPSST TGSTFWMLPV  360
TTTGPSILTA ASGAGSSEPQ MWPFGTASGN TLQAPLHFVP RFNLQGNLES QGGRASPLQL  420
GSMLLQQQHQ PSQHLGLGLS ESNLGMLAAL NAYSRGGPNI NSDQNNPMEH HQQQGTNSGD  480
EDPNNSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.89690.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016727488.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5181e-87TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A1U8MPN60.0A0A1U8MPN6_GOSHI; transcription factor TCP8-like
STRINGGorai.012G166500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-78TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]