PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1613
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 216aa    MW: 22488.3 Da    PI: 5.9397
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1613genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.91.6e-282104198
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++   +r+++++sl++eA  ra +Pv+Gavg++++++++++q++++
  Gh_A03G1613   2 SCNGCRILRKGCSENCMLRQSLqcienPQAQAHATVFVAKFFGRAGLMSFLSSVASPQRPALFQSLLFEAVGRAINPVSGAVGLLWTGNWNVCQSAVQ 99 
                  6**********************99***********************************************************************99 PP

       DUF260  94 lallk 98 
                  ++l++
  Gh_A03G1613 100 TVLQG 104
                  88765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6541107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSCNGCRILR KGCSENCMLR QSLQCIENPQ AQAHATVFVA KFFGRAGLMS FLSSVASPQR  60
PALFQSLLFE AVGRAINPVS GAVGLLWTGN WNVCQSAVQT VLQGGTLQPL PEFSGGVSGS  120
DFEDVGETVG VGGGGGGGGP CIQSGGFVDV VKCKASDLNL CLTIGDDDRA VKRRRESTSS  180
EESETTTLGS RFSGDGNSSN VSGGADGERK LLRLFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173RAVKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.117110.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098689520.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5817785e-87JX581778.1 Gossypium hirsutum clone NBRI_GE14483 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644932.11e-153PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN234e-60LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2P5XK531e-153A0A2P5XK53_GOSBA; Uncharacterized protein
STRINGGorai.005G232500.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2226945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.17e-62LOB domain-containing protein 38