PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0198
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 225aa    MW: 24317.6 Da    PI: 8.7319
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0198genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.67.7e-42401391100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA+ r+rdPvyG++g i +lqqq+++l+ael++++
  Gh_A03G0198  40 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPENQRADAANSLVYEANLRLRDPVYGCMGAIVTLQQQMQNLQAELNAIR 137
                  7**********************************************************************************************998 PP

       DUF260  99 ee 100
                  +e
  Gh_A03G0198 138 AE 139
                  87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.77539140IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-4240137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSRDRERLDE IGKKIKTDAV GEMGRRHLLG PPGTLNTITP CAACKLLRRR CAEECPFSPY  60
FSPHEPHKFA AVHKVFGASN VSKMLMEVPE NQRADAANSL VYEANLRLRD PVYGCMGAIV  120
TLQQQMQNLQ AELNAIRAEI LKYKIREVTN SNILPSTHPH THTHTHATLV SGGAVSVAAS  180
SSPLPPPPSI VVSTSSSSSA SSLYTSATSA TGYSSISSDN VPFFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-44321483119LOB family transfactor Ramosa2.1
5ly0_B2e-44321483119LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016723099.11e-166PREDICTED: LOB domain-containing protein 15-like
SwissprotQ8L5T52e-80LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A1U8MC161e-164A0A1U8MC16_GOSHI; LOB domain-containing protein 15-like
STRINGGorai.003G151800.11e-129(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19272781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.12e-81LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]