PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1745
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 284aa    MW: 31752.8 Da    PI: 6.3139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1745genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.34.9e-3138145199
                  EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  f+k ltpsdv+k++rlv+pk++ae+h         + + +++  l++edesg+ W ++++y+++s++yvltkGW+++vk+++L++gD+++F++++ + 
  Gh_A01G1745  38 FEKPLTPSDVGKLNRLVIPKQHAEKHfplggsggdSVVYNKGLLLSFEDESGKCWCFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDIILFQRHRLDA 135
                  99***************************999776333447889************************************************755599 PP

                  E..EEEEE-S CS
           B3  90 felvvkvfrk 99 
                  ++l+++++r+
  Gh_A01G1745 136 ERLFIGWRRR 145
                  99*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-3931146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-3034143IPR015300DNA-binding pseudobarrel domain
CDDcd100175.98E-2836136No hitNo description
PfamPF023625.9E-2838145IPR003340B3 DNA binding domain
PROSITE profilePS5086313.02838146IPR003340B3 DNA binding domain
SMARTSM010193.2E-2438146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEPTQSYQPS MSFFSNIPSS HIEDEYEQFD DHEKEPMFEK PLTPSDVGKL NRLVIPKQHA  60
EKHFPLGGSG GDSVVYNKGL LLSFEDESGK CWCFRYSYWN SSQSYVLTKG WSRYVKEKQL  120
DAGDIILFQR HRLDAERLFI GWRRRGAALD GGNAELGNNS GGVRGGDNSG WSSSRGLYQG  180
NPYPGHIQGQ CHGANVPYQH DCLHAGSMAE NQGPGGNPKR LLRLFGVNLE CHLDDSSEPS  240
TPDSSSVSSQ GPTSTHHFYS QSYTSDYMDI GFSRDMNQMN NHRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-463515111124DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468154.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ22e-69Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A0D2QI580.0A0A0D2QI58_G
STRINGVIT_08s0007g02810.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-67B3 family protein