PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0544
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 474aa    MW: 52093.6 Da    PI: 7.4042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0544genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.9e-063624001154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Gh_A01G0544 362 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 400
                  5778999**********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.595351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-10361411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.24E-7361405No hitNo description
SMARTSM003530.0023362406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-9365406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MADEFNTGTN WWDSSRTAGS SSSSSGLNNS FGWATEMVDI KAARSPMDSV SSVSGSSVVF  60
HDNPKLQVGL GPDHHHHHHH HHHPPSDLQM MGLGLPSQAM DWNQALLRGD KSEVSFRSML  120
QDHNLNASNA NYQHQQRETG GIGSSQLHWR DKMFTGDAGL KQIGRGFSLD QSQFSPHGSS  180
SDSTVTCQSL PSSFQMDSST ALYGSPSTIL QGLLGSENQP QQQQQQSSYE NRSMNYQYGA  240
AAPTSYGMNT NDQLLPNALS KVPQFLRSSP PKQQLHGQLH FSNNAPFWNP SAAAAASMTD  300
HVRPGFFPSL QTQFQTGTFD EKPKNISEVR ETSTVVKKSG NEPASTKRPR NETPSTMPAF  360
KVRKEKMGDR ITALQQLVSP FGKTDTASVL SEAIEYIKFL HAQVSQVLST PYMKNEATIQ  420
HPQQNPEKSK DPAEGPKQDL RSRGLCLVPV SSTFPLTNES PVDFWTPTFG GTFR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5834562e-76JX583456.1 Gossypium hirsutum clone NBRI_GE16500 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459379.10.0PREDICTED: transcription factor bHLH123-like isoform X3
SwissprotQ8GXT34e-88BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0D2Q9I00.0A0A0D2Q9I0_G
STRINGPOPTR_0011s13320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-79bHLH family protein