PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS74178.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family E2F/DP
Protein Properties Length: 318aa    MW: 34902.2 Da    PI: 7.1989
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS74178.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.87.6e-2879160271
     E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e               d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  EPS74178.1  79 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadptntlapdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 160
                 789********...*****999******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.1E-1235305IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.106.5E-4774165IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.5E-3578160IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.4E-2580160IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.18E-2181161IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.18E-43165268IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.66E-40166272No hitNo description
SMARTSM011381.9E-64167316IPR014889Transcription factor DP, C-terminal
PfamPF087811.6E-39168277IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
GGGGGATASW GATLSGQSIS TSGSAGTPSS RSEVVMATVA RDTAFHHLSN LDINGDDAGS  60
QGTTGKKKRG QRAATGDKNG RGLRQFSMKV CEKVESKGRT TYNEVADELV AEFADPTNTL  120
APDQQQYDEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG LPRTSLNDIE ELKNERIGLR  180
SRIEKKASYL EELEEQYIGL QNLIARNECI YESGNAPTGG VALPFILVQT RPHATVEVEI  240
SEDMQLVHFD FNSTPFELHD DNYVLKAMKL CDKQRDKMGT PKMPLTGGVK SSSFPDHRAV  300
STSSPLPGIL RTRSKLEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-4272165193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075422.11e-176transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-156DPB_ARATH; Transcription factor-like protein DPB
TrEMBLS8EDW60.0S8EDW6_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_010241817.11e-171(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-153Transcription factor DP
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]