PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71531.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WRKY
Protein Properties Length: 107aa    MW: 12208.7 Da    PI: 10.1856
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71531.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY887.8e-282180259
                --SS-EEEEEEE--TT-SS-EE.EEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  2 dDgynWrKYGqKevkgsefprs.YYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                 D ++WrKYGqK++kgs +prs YYrC++   C++kk+vers +dp+ + + Y+geH+h+
  EPS71531.1 21 GDSWAWRKYGQKPIKGSLYPRSnYYRCSTLkACSAKKQVERSPNDPSRFLVSYTGEHTHQ 80
                599******************87****99889***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-28682IPR003657WRKY domain
SuperFamilySSF1182901.7E-241482IPR003657WRKY domain
PROSITE profilePS5081125.8211582IPR003657WRKY domain
SMARTSM007741.1E-292081IPR003657WRKY domain
PfamPF031061.2E-222280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
KRRKNEETRM VHEMTQEEVC GDSWAWRKYG QKPIKGSLYP RSNYYRCSTL KACSAKKQVE  60
RSPNDPSRFL VSYTGEHTHQ RPAHRRYLSG CSVSNSTKLS PAAGDGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-171082474WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076091.14e-43PREDICTED: probable WRKY transcription factor 27
SwissprotQ9FLX83e-36WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLS8D2A82e-76S8D2A8_9LAMI; Uncharacterized protein (Fragment)
STRINGAT5G52830.17e-34(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-37WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]