PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70111.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NF-YC
Protein Properties Length: 215aa    MW: 23704.7 Da    PI: 4.6172
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70111.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.51.3e-55271311102
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw++q   ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rsw+haeenkrrtl+k+diaaa+trtdifdflvdiv
  EPS70111.1  27 QLQMFWAYQrqeIEHANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTVRSWIHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 125
                 89****9998889************************************************************************************** PP

       NF-YC  97 prdelk 102
                 prde+k
  EPS70111.1 126 PRDEIK 131
                 ***975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.37E-3314121IPR009072Histone-fold
PfamPF008084.9E-2149112IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.9E-3750127IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MESNPQQSAA GAPYPQPPYQ SLHNQQQLQM FWAYQRQEIE HANDFKNHQL PLARIKKIMK  60
ADEDVRMISA EAPILFAKAC ELFILELTVR SWIHAEENKR RTLQKNDIAA AITRTDIFDF  120
LVDIVPRDEI KDDAADLGGI VPPPDAATAG VPYYYPPIGQ PLMMPPGVDP SVYLQPAPVP  180
HSQAWPSVWQ TPAEDGSYAS GGGSSSGQAN LDGQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-442812719119HapE
4g92_C3e-442812719119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830575.11e-102PREDICTED: nuclear transcription factor Y subunit C-1
SwissprotQ9SMP04e-88NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLS8CYK11e-159S8CYK1_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000394704e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40872143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.16e-88nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]