PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69684.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WRKY
Protein Properties Length: 161aa    MW: 17385.9 Da    PI: 10.0816
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69684.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-313492259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+rs ed +++++tYeg+H+h+
  EPS69684.1 34 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRSWEDRSILVTTYEGTHDHP 92
                7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-321894IPR003657WRKY domain
SuperFamilySSF1182902.22E-282694IPR003657WRKY domain
PROSITE profilePS5081129.0462894IPR003657WRKY domain
SMARTSM007749.7E-363393IPR003657WRKY domain
PfamPF031061.4E-263592IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
GERSSDSKPT ETVDATMRKA RVSVLARSET TVISDGCQWR KYGQKMAKGN PCPRAYYRCT  60
MAVGCPVRKQ VQRSWEDRSI LVTTYEGTHD HPLPPAALAM ASTTSAAARM ILSGAKSSAE  120
ANFLARMTML PSASDAAGAV SASPMMPVTL DLTRNPHRQI P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-252096176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491141.15e-70PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC32e-64WRK42_ARATH; Probable WRKY transcription factor 42
TrEMBLS8CR241e-116S8CR24_9LAMI; Uncharacterized protein (Fragment)
STRINGPOPTR_0014s15320.13e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-52WRKY family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]