PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67436.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB
Protein Properties Length: 118aa    MW: 13954 Da    PI: 11.2843
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67436.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-151258147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed  l+++v+ +G+ +W++Ia++++ +R++k+c++rw++ 
       EPS67436.1 12 RGHWRPSEDFELKQLVAVYGPQNWNLIAQKLQGRRSGKSCRLRWFNQ 58
                     899*****************************9***********996 PP

2Myb_DNA-binding56.65.7e-1865107145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+
       EPS67436.1  65 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWH 107
                      678*******************.*********.***********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6759IPR017930Myb domain
SMARTSM007176.6E-121161IPR001005SANT/Myb domain
PfamPF002497.2E-151258IPR001005SANT/Myb domain
SuperFamilySSF466892.4E-2712106IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-241366IPR009057Homeodomain-like
CDDcd001671.04E-91557No hitNo description
PROSITE profilePS5129427.03260114IPR017930Myb domain
SMARTSM007176.4E-1464112IPR001005SANT/Myb domain
PfamPF002491.3E-1465107IPR001005SANT/Myb domain
CDDcd001673.61E-1067107No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2167113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
GSGSLRSKIC SRGHWRPSED FELKQLVAVY GPQNWNLIAQ KLQGRRSGKS CRLRWFNQLD  60
PRINRRAFSE EEEERLMAAH RLYGNKWAMI ARLFPGRTDN AVKNHWHIVM ARKYRETS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31121137107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307310.19e-70R2R3MYB transcription factor 117
RefseqXP_016571686.11e-69PREDICTED: uncharacterized protein LOC107869748
SwissprotQ9FDW16e-38MYB44_ARATH; Transcription factor MYB44
TrEMBLS8CRG12e-84S8CRG1_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc05g007870.1.13e-69(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-69myb domain protein 105
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]