PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66815.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family AP2
Protein Properties Length: 293aa    MW: 33653.8 Da    PI: 8.9892
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66815.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.81.3e-0895123134
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslg 34 
                 s+y+GV++++++grW+++I+       + k+++lg
  EPS66815.1  95 SQYRGVTFYRRTGRWESHIWA------CgKQVYLG 123
                 78*******************......55****99 PP

2AP243.58e-14211261155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k++g
  EPS66815.1 211 SKYRGVTLHK-CGRWEARMGQY--L-GKKYIYLGLFDSEIEAARAYDKAAIKFYG 261
                 89********.7******5552..1.25**********99***********9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.36896176IPR001471AP2/ERF domain
SMARTSM003802.7E-1896182IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-6146176IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-8147176IPR001471AP2/ERF domain
CDDcd000181.89E-24211271No hitNo description
SuperFamilySSF541712.03E-17211269IPR016177DNA-binding domain
PfamPF008474.0E-9211261IPR001471AP2/ERF domain
PROSITE profilePS5103216.265212269IPR001471AP2/ERF domain
SMARTSM003806.7E-31212275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-16212269IPR001471AP2/ERF domain
PRINTSPR003672.5E-6213224IPR001471AP2/ERF domain
PRINTSPR003672.5E-6251271IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDASSTDNSD LGRFLGFNVW KNNGDYAEGE KSSVGYELRQ FLPDRDDAKK NQRIDCVEDR  60
SVAEEQVIMA AQHQQWQLRR QQVTKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWACGKQV  120
YLGNGRLTSL HQQLILIQQL IILKLAGGFD TAHAAARAYD LAAIKFRGLE ADINFEVCDY  180
EDDLKQIKDL TTEEFVHVLR RQSTGFSRGA SKYRGVTLHK CGRWEARMGQ YLGKKYIYLG  240
LFDSEIEAAR AYDKAAIKFY GREALTNFEP AMYDKDPDSQ GEKQQTPNSF LMG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077383.11e-100floral homeotic protein APETALA 2
SwissprotB8AMA94e-90AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB54e-90AP22_ORYSJ; APETALA2-like protein 2
TrEMBLS8CJA60.0S8CJA6_9LAMI; Uncharacterized protein
STRINGGorai.009G104200.14e-92(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.29e-83AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  4. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]