PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66178.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WRKY
Protein Properties Length: 360aa    MW: 39452.7 Da    PI: 8.3951
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66178.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30152210259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +v+++tYeg+Hnh+
  EPS66178.1 152 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDRTVLVTTYEGSHNHP 210
                 7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-33136212IPR003657WRKY domain
SuperFamilySSF1182906.54E-28144212IPR003657WRKY domain
PROSITE profilePS5081129.539146212IPR003657WRKY domain
SMARTSM007742.6E-36151211IPR003657WRKY domain
PfamPF031061.6E-26153210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
QLERLQMELE RMNTENQRLR ATLNQVTNDF SVLKMHLSSL MNENSSTAQE HNANANAMDL  60
IYPSELFICF FFHQIFGVEK RKHEIQSNTS SEERTLSASS SKKKRTGRDD SPVSEGWVSE  120
KAPVVDRQPP LESTMRKARV SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA  180
VGCPVRKQVQ RCADDRTVLV TTYEGSHNHP LPPAAMAMAS TTSAAASMLL SGAMPSPDAM  240
MNMNMNPNIL ARTILPCASN LATISASAPF PTVTLDLTQT PNPTTEVQRP RQFQFPFATP  300
PPPCYDQSKF MGLQTSQQDQ SQTLSDTLSA ITADPNFAAA LAAAIKSIVG GGGNPNAEGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-22142212877Probable WRKY transcription factor 4
2ayd_A1e-22138214176WRKY transcription factor 1
2lex_A1e-22142212877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263115.11e-126PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5191e-111WRKY6_ARATH; WRKY transcription factor 6
TrEMBLS8DSM50.0S8DSM5_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_10s0116g01200.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-75WRKY family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]