PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63307.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family FAR1
Protein Properties Length: 738aa    MW: 83971.6 Da    PI: 7.2032
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63307.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.48.1e-1237112290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                 fY+eYA+++GF  r++ +  s  +g  ++++f Cs++g+++   ++              C+a l+++++   +kw+vtk++++H H+++
  EPS63307.1  37 FYEEYARNIGFIPRVNLK-PSISDGMSISQEFICSRNGSKKIAGEE-------------TCEAALRIELNGrINKWVVTKFVKDHAHSIV 112
                 9**********9988865.5558999*************9998887.............9**********999**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-837112IPR004330FAR1 DNA binding domain
PfamPF105512.0E-25232323IPR018289MULE transposase domain
PfamPF044349.8E-10496539IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.251506542IPR007527Zinc finger, SWIM-type
SMARTSM005759.3E-5517545IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
NGEANPSEHS LSQDEDGIFS EPQIGMEFDS EDAARMFYEE YARNIGFIPR VNLKPSISDG  60
MSISQEFICS RNGSKKIAGE ETCEAALRIE LNGRINKWVV TKFVKDHAHS IVRCSKRQRS  120
KHKRQFTTSA DYDGESSEFM DLVPSASMYA SLDGNFSASG LKNSAKTMGS SGYPRSTLGR  180
DAQNLLDYFK KMQAENPGFY YAIQLDEENR MANAFWADSR SRASYAHFGD AVILDTTYRV  240
NRCRVPFAPF TGVNHHGHSI LFGCALLFDD SQSTFIWLFK TFLAAMSDRA PVSFTTDRDR  300
AIVTAVAEVF PKSRHCINKW DLLREGQEVR LSNPNFQVDL YKCISMAETV EEFESSWNSV  360
VDKYGLRRND WLQSIYDARQ QWIPVYFRDS FFAAISSGTE LETSFFDGYV DNQTTLPMFF  420
KQYERALENS FDKEVDADFD TMCTAPVLRT PSPMEKQASS LYTKRIFAKF QEELVETFVY  480
TANRVDGDQH NFTYRVAKFE DDRKSYSVAV NVAEKRASCS CRMFEHCGIL CRHILTVFTV  540
VTNILTLPSH YILKRWTRSA KSIETSDEKD SEVPRSMTTR YNRLCREAIV FSEEASISSK  600
TYISGINVLR EGTKTVGGLK RRSSSASAVG VHHDARKTQA GLPETAPSLW PRPEEISPSF  660
NLDRVGAVPD TVLQNFLKES SFFDFFLRET KYYSTFAFSD LSSMKKVVLP HLKSMTWLME  720
NKNSNPAVKI AVINLKVR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090244.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_011090246.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_011090247.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_020552429.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLS8DU010.0S8DU01_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.N02416.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]