PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63294.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family E2F/DP
Protein Properties Length: 188aa    MW: 20709.2 Da    PI: 10.4408
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63294.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP47.23.8e-152612371
     E2F_TDP 23 givtlnevakeLvse......dvknkrRRiYDilNVLealnliek.....kekneirwkg 71
                ++++l+++ak L+ +        ++k+RR+YDi+NVL++++ iek     ++k+++rw g
  EPS63294.1  2 DTISLDDAAKLLLGNgkhtsmTSRTKVRRLYDIANVLSSMKFIEKthqpeTRKPAFRWLG 61
                589*********999****998899********************9999999******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013729.4E-9161IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.5E-13261IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-13363IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-8462IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDTISLDDAA KLLLGNGKHT SMTSRTKVRR LYDIANVLSS MKFIEKTHQP ETRKPAFRWL  60
GLNGKPETNN TVAESSATVE DSGKKRMFGT DISNTSGKRF KVSGDGGHLP KPQDKTTTAQ  120
IKNVSSEAVT TKSSYQFGPF APVNLSKIGS SLEEKRRSLI IDWESLSSSY RPRYENQGST  180
TSSSQQLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548638.14e-72E2F transcription factor-like E2FE isoform X1
TrEMBLS8C8T61e-135S8C8T6_9LAMI; Uncharacterized protein
STRINGMigut.I00063.1.p7e-61(Erythranthe guttata)
STRINGMigut.L00934.1.p4e-62(Erythranthe guttata)
STRINGMigut.O00344.1.p5e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.11e-40DP-E2F-like 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]