PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63291.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB
Protein Properties Length: 118aa    MW: 13524.6 Da    PI: 10.1692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63291.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l d ++++G+g +W + +++ g++R++k+c++rw++yl
       EPS63291.1 14 KGPWSPEEDAKLRDFIERFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79**********************************************7 PP

2Myb_DNA-binding414.3e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
       EPS63291.1  69 GEFSDEEDRIICSLYAAIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.492962IPR017930Myb domain
SuperFamilySSF466892.08E-2811109IPR009057Homeodomain-like
SMARTSM007171.7E-111364IPR001005SANT/Myb domain
PfamPF002492.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-251569IPR009057Homeodomain-like
CDDcd001675.26E-81662No hitNo description
PROSITE profilePS5129422.09263117IPR017930Myb domain
SMARTSM007172.2E-1267115IPR001005SANT/Myb domain
PfamPF002499.4E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2470117IPR009057Homeodomain-like
CDDcd001675.53E-870113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLRDFIE RFGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLYAAIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684035.19e-83PREDICTED: transcription factor RAX2
SwissprotQ9FKL22e-77MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0H4LI127e-83A0A0H4LI12_9CARY; R2R3 type MYB15
TrEMBLS8CFI44e-83S8CFI4_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc09g008250.2.12e-79(Solanum lycopersicum)
STRINGPGSC0003DMT4000050852e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-78myb domain protein 36
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]