PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63043.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 157aa    MW: 17657.7 Da    PI: 5.7819
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63043.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-18554255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  EPS63043.1  5 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 54
                59*******.**********93....35999**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.42E-30561No hitNo description
Gene3DG3DSA:3.30.730.104.2E-30561IPR001471AP2/ERF domain
PROSITE profilePS5103222.089562IPR001471AP2/ERF domain
PfamPF008472.2E-11554IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22562IPR016177DNA-binding domain
SMARTSM003808.3E-34568IPR001471AP2/ERF domain
PRINTSPR003675.4E-10617IPR001471AP2/ERF domain
PRINTSPR003675.4E-102844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
GGTMRYRGVR RRPWGRYAAE IRDPQSKERR WLGTFDTAEE AACAYDCAAR AMRGVKARTN  60
FVYPTSENLV HPNDVNSNHA LNLAFLRDYL NPPTPKFPEP SSFPYGSPLP EQVGFPENDI  120
WFNDGNGAVL DQPESMDFFP SGSGLLQEVL NGFFPKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-205611471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845404.18e-48PREDICTED: ethylene-responsive transcription factor ESR2-like
SwissprotQ9FYK51e-43ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBLS8DJJ71e-113S8DJJ7_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.K00605.1.p4e-47(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-20DORNROSCHEN-like
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Thoma R,Chandler JW
    Polarity in the early floral meristem of Arabidopsis.
    Plant Signal Behav, 2015. 10(4): p. e992733
    [PMID:25806573]
  4. Comelli P,Glowa D,Chandler JW,Werr W
    Founder-cell-specific transcription of the DORNRÖSCHEN-LIKE promoter and integration of the auxin response.
    J. Exp. Bot., 2016. 67(1): p. 143-55
    [PMID:26428063]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  7. Durán-Medina Y,Serwatowska J,Reyes-Olalde JI,de Folter S,Marsch-Martínez N
    The AP2/ERF Transcription Factor DRNL Modulates Gynoecium Development and Affects Its Response to Cytokinin.
    Front Plant Sci, 2017. 8: p. 1841
    [PMID:29123539]