PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62805.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family FAR1
Protein Properties Length: 715aa    MW: 81723.7 Da    PI: 6.6875
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62805.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR198.76.4e-3182173291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 fYn YA++vGFs+r+s+s++s+r+g i++r fvC keg+r+ ++k+  +++ +r+r++tr+gCka+l vk +++gkw+v+ +++eHnHel+p
  EPS62805.1  82 FYNLYARRVGFSTRVSSSRRSRRDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKIQDSGKWMVSGFVKEHNHELVP 173
                 9***************************************998888545677889***********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-2982173IPR004330FAR1 DNA binding domain
PfamPF105512.0E-30294386IPR018289MULE transposase domain
PfamPF044341.3E-10563610IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.423579611IPR007527Zinc finger, SWIM-type
SMARTSM005754.7E-8586613IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MENGVIEFDI GVGGADDRIE IEACNDHEEE EERDASTSDA YSHGSGSGEN NFDMRIYIPE  60
GDIELEPNVG MEFESEEAAK AFYNLYARRV GFSTRVSSSR RSRRDGAIIQ RSFVCAKEGF  120
RNLNEKRTKD REIKRPRTVT RVGCKASLSV KIQDSGKWMV SGFVKEHNHE LVPPDQVHRL  180
RSHRQISGPA KTLIDTLQAA GMGPRRIMSV LIKEYGGISK VGFTEVDCRN YMRNSKHRST  240
EGDTQLLLDY LKQKQAQNPS FFYDVQWKEE QCTGNLFWAD LKARADYNHF GDTVTFDTTY  300
RSNRYRLPFA PFTGLNHHGQ PVLFGCAFLL NESEASFVWL FRTWLAAMSD RAPLSITTEH  360
DDVICSAVTQ VFPSTRHRFC KWHVYKQCQE KLSHVLLLNH PHFEAAFHQC VNSSETCEEF  420
ESCWDSLVDK YDLRDHGWFR ALYDDRRRWV PVYIRATFFA EISVTERSDG MNSYFDGYVN  480
ASTGLSQFFK LYEKALESRH EKEVKADLDT MNTPPVLKTP SPMEKQASEL YTRKIFTRFQ  540
EELVSTLTLT ASAVEDDGEI TTYRVANFGE DHRAHLVRFN VLEMKALCSC RMFEFSGLLC  600
RHVLAVFRVA NVLTLPPRYV SKRWTRNARS CVVLEEEQAA ADCSGGRRSY LESRTFRYNS  660
LRHEAFKLAD QGSESLETYS VAAAALAEAS AKVAEAIRNE GKDRLADEGS FRGSS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552571.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020552572.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020552573.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLS8C7P10.0S8C7P1_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_004290092.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]