PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61539.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB
Protein Properties Length: 165aa    MW: 18829.4 Da    PI: 9.9895
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61539.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++vk +G g+W++ ++  g+ R++k+c++rw +yl
       EPS61539.1 14 KGAWTKEEDQRLINYVKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding57.23.9e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++Ede++++++ +lG++ W+ Ia +++ gRt++++k++w+++l
       EPS61539.1  67 RGNFSEDEDEIIIKLHSLLGNK-WSMIAGRLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.471961IPR017930Myb domain
SMARTSM007173.9E-141363IPR001005SANT/Myb domain
SuperFamilySSF466893.07E-3013108IPR009057Homeodomain-like
PfamPF002491.2E-161461IPR001005SANT/Myb domain
CDDcd001674.32E-111661No hitNo description
PROSITE profilePS5129428.562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2865117IPR009057Homeodomain-like
SMARTSM007177.8E-1766114IPR001005SANT/Myb domain
PfamPF002498.5E-1667112IPR001005SANT/Myb domain
CDDcd001675.53E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYVK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SEDEDEIIIK LHSLLGNKWS MIAGRLPGRT DNEIKNYWNT HLKRKLISRG  120
IDPQTHRPLI SAKIQPSKSE QQTVSIRTPT TENSDNNICT SSTTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-311311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075785.16e-92PREDICTED: transcription repressor MYB6
SwissprotQ388512e-90MYB6_ARATH; Transcription repressor MYB6
TrEMBLS8C4F11e-121S8C4F1_9LAMI; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.6__2929__AT4G09460.11e-89(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-91myb domain protein 6
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]