PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61412.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WRKY
Protein Properties Length: 120aa    MW: 13584.2 Da    PI: 11.2355
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61412.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.9e-304098259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k++e+s++dp  +++tY+geHnh+
  EPS61412.1 40 SDMWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQLEQSRSDPGKFTVTYSGEHNHT 98
                79*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-3125100IPR003657WRKY domain
PROSITE profilePS5081132.1134100IPR003657WRKY domain
SuperFamilySSF1182903.01E-2635100IPR003657WRKY domain
SMARTSM007745.7E-353999IPR003657WRKY domain
PfamPF031061.2E-254197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
QHDHSSGSIG SGSVSMLKHK RRKNQHKRVV IQVSADGLSS DMWAWRKYGQ KPIKGSPYPR  60
SYYRCSSSKG CLARKQLEQS RSDPGKFTVT YSGEHNHTQP TRRNSLAGTV RQKFPSTKNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-18381001677Probable WRKY transcription factor 4
2lex_A1e-18381001677Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854210.14e-59PREDICTED: probable WRKY transcription factor 29 isoform X2
SwissprotO046093e-46WRK22_ARATH; WRKY transcription factor 22
TrEMBLS8DNZ84e-85S8DNZ8_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc08g081610.2.11e-53(Solanum lycopersicum)
STRINGPGSC0003DMT4000320911e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-35WRKY family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]