PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61412.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WRKY
Protein Properties Length: 120aa    MW: 13584.2 Da    PI: 11.2355
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61412.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.9e-304098259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k++e+s++dp  +++tY+geHnh+
  EPS61412.1 40 SDMWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQLEQSRSDPGKFTVTYSGEHNHT 98
                79*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-3125100IPR003657WRKY domain
PROSITE profilePS5081132.1134100IPR003657WRKY domain
SuperFamilySSF1182903.01E-2635100IPR003657WRKY domain
SMARTSM007745.7E-353999IPR003657WRKY domain
PfamPF031061.2E-254197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
QHDHSSGSIG SGSVSMLKHK RRKNQHKRVV IQVSADGLSS DMWAWRKYGQ KPIKGSPYPR  60
SYYRCSSSKG CLARKQLEQS RSDPGKFTVT YSGEHNHTQP TRRNSLAGTV RQKFPSTKNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-18381001677Probable WRKY transcription factor 4
2lex_A2e-18381001677Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854210.18e-59PREDICTED: probable WRKY transcription factor 29 isoform X2
SwissprotO046094e-45WRK22_ARATH; WRKY transcription factor 22
TrEMBLS8DNZ82e-83S8DNZ8_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.A00718.1.p5e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-35WRKY family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  4. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  5. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  6. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  7. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]