PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61231.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB
Protein Properties Length: 123aa    MW: 14280.5 Da    PI: 10.8946
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61231.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     rg+W+  E  ll+++++q+G g+W++ +++   + R++k+c++rw +yl
       EPS61231.1 14 RGPWSNKENALLINYIQQHGEGQWRSLPKKAAgLLRCGKSCRLRWMNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding54.23.4e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
       EPS61231.1  68 RGNISEDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 113
                      7899******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-23565IPR009057Homeodomain-like
PROSITE profilePS5129414.318962IPR017930Myb domain
SuperFamilySSF466891.39E-2811109IPR009057Homeodomain-like
SMARTSM007176.6E-111364IPR001005SANT/Myb domain
PfamPF002493.9E-131462IPR001005SANT/Myb domain
CDDcd001672.22E-81662No hitNo description
PROSITE profilePS5129424.73163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2566117IPR009057Homeodomain-like
SMARTSM007171.1E-1567115IPR001005SANT/Myb domain
PfamPF002491.1E-1568113IPR001005SANT/Myb domain
CDDcd001672.90E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MGRSPCCSKE GLRRGPWSNK ENALLINYIQ QHGEGQWRSL PKKAAGLLRC GKSCRLRWMN  60
YLRPGIKRGN ISEDEEDLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN THLVKRLDNK  120
STK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121195110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070362.16e-73PREDICTED: transcription repressor MYB5-like
SwissprotQ388508e-62MYB5_ARATH; Transcription repressor MYB5
TrEMBLS8CA463e-85S8CA46_9LAMI; Myb transcription factor (Fragment)
STRINGSolyc08g082890.2.18e-69(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-63myb domain protein 5
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]