PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59592.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 222aa    MW: 23902.8 Da    PI: 9.5294
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59592.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.3e-212373256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  EPS59592.1 23 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGH 73
                69*******.**********8...557**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-152373IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-232381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-332380IPR001471AP2/ERF domain
CDDcd000182.17E-182380No hitNo description
PROSITE profilePS5103224.2892380IPR001471AP2/ERF domain
SMARTSM003802.7E-392386IPR001471AP2/ERF domain
PRINTSPR003671.4E-112435IPR001471AP2/ERF domain
PRINTSPR003671.4E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MKEKENGEAA PAAKVSGGVK ELHYRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA  60
RAYDAAAREF RGHKAKTNFP LPSEAAHSPS RSSTVESSSA DLKPRAPVEL DLTRRLGAGH  120
DTAVTVAHPA GYQFFRRQPA VAVLPTGQPV FFFQPLVQPA SYQIPAPTGS PLVQPASLPR  180
GGALISDSDT SSVVDENHYY DGSDPKKALN LDLNLPPPPD AP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-222381261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-222381564ATERF1
3gcc_A9e-222381564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100355.16e-85ethylene-responsive transcription factor 4-like
SwissprotQ9LW493e-65ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLS8DJC31e-159S8DJC3_9LAMI; Ethylene response factor 3
STRINGMigut.M00159.1.p9e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-26erf domain protein 9
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]