PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58358.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ZF-HD
Protein Properties Length: 195aa    MW: 21269.8 Da    PI: 8.2554
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58358.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.63.4e-291501159
  ZF-HD_dimer 11 kNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                 kNhAa+lGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+++
   EPS58358.1  1 KNHAAALGGHAVDGCGEFMPSPNSNpAEPTSLKCAACGCHRNFHRREPDD 50
                 8***********************99********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.0E-24148IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.8E-26147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.904147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-19154IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-27115187IPR009057Homeodomain-like
SuperFamilySSF466891.31E-15115186IPR009057Homeodomain-like
TIGRFAMsTIGR015653.8E-23125182IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
KNHAAALGGH AVDGCGEFMP SPNSNPAEPT SLKCAACGCH RNFHRREPDD TPPGLEAPAL  60
EYHPLHRHHP PLPPHSGSPN NSPSPPPISS SYYPSAPHML LALSHGLSSA ALPDNTPPNS  120
GSGSRKRFRT KFSQFQKVKM LELAEKVGWK MQKRDDDLIN ESCSDIGVDK GVFKVWMHNN  180
KNTFGKKDQN PPEDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-181261831875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061733.19e-78zinc-finger homeodomain protein 10-like
SwissprotQ9LXG07e-58ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLS8D6V41e-141S8D6V4_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_14s0108g00750.t017e-75(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-43homeobox protein 34
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]