PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38716_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 166aa    MW: 19462.1 Da    PI: 10.3549
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38716_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.7e-141159350
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                                i n+s r  t+ kR + ++KK +ELS+LC+++ + i++s+ + +l+ ++
  Cotton_A_38716_BGI-A2_v1.0 11 ITNDSSRRATYKKRIKVLMKKMSELSTLCGINTCAIMYSPyESQLKVWP 59
                                89*************************************9334677776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.638149IPR002100Transcription factor, MADS-box
CDDcd002661.97E-25384No hitNo description
PRINTSPR004042.4E-5323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-20394IPR002100Transcription factor, MADS-box
PfamPF003192.3E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MIRKKVKLVY ITNDSSRRAT YKKRIKVLMK KMSELSTLCG INTCAIMYSP YESQLKVWPS  60
PIGGQQVLSK FQMILEMEQR KNMVKQESFL SQRTVKVVEQ LKKHCKDNQE KKMIQVMFNN  120
ICVKWVIHGF NFKDINDLNL LVDEKLSNID KRMDAFTMTP LYTLGA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640192.11e-121PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-42AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0D2NZB78e-93A0A0D2NZB7_GOSRA; Uncharacterized protein
STRINGGorai.003G105500.11e-93(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-45AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]