PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37278_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 388aa    MW: 43148.9 Da    PI: 8.1104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37278_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.21.9e-052773151154
                                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                  R +++ ++++ L++l+ +      +K + a++L +++eYIk L
  Cotton_A_37278_BGI-A2_v1.0 277 VRKEKMGDRISALQQLVSPF-----GKTDTASVLSEVIEYIKFL 315
                                 5778999***********98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.47E-7259319No hitNo description
PROSITE profilePS5088812.601266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-11276332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-9276337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MADEFNPGPN WWDRTAAPSS SSSSSSSSSV LNNSLGTFGG WNPEMADIKA RSPMDSISSS  60
SSSSVSAPDL HMMGLGLSSQ AMDWNQAFMR GDHKSKTSFK SMLEEHNLNA SNPNYHQEMM  120
GFKHQSSSQF SPCSSDSSII NNMDSTSLYG SPSTILQGLL GTENQTYENR SISYQYGMNN  180
NDPLLPNSWS KVPQFLKNSP PKNGQLHFSN NAPFWNPSAA TTAPMVDHRP PGFFPSFPTP  240
NFDEKPKNNI YEVKKNGNET SSKRPRNEMP SLPAFKVRKE KMGDRISALQ QLVSPFGKTD  300
TASVLSEVIE YIKFLHEQIN VLSTPYKKTR ATAQQQQQQN CEKSKDFEGF KHDLRSRGLC  360
LVPVSSTFPM THESTVDFWT PTFGGTFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443606.10.0PREDICTED: transcription factor bHLH123-like isoform X2
SwissprotQ8GXT31e-65BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0D2SHQ10.0A0A0D2SHQ1_G
STRINGPOPTR_0011s13320.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-56bHLH family protein