PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34715_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17602.6 Da    PI: 10.3457
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34715_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41e-141050242
                                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                 i+n+  r+ t+ kR++g+lKK +EL +LC++ ++ iifss
  Cotton_A_34715_BGI-A2_v1.0 10 LISNEYARKATLKKRKAGLLKKLSELTTLCGVAACAIIFSS 50
                                59**************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.62E-19185IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.096150IPR002100Transcription factor, MADS-box
CDDcd002664.34E-20285No hitNo description
PRINTSPR004048.6E-6323IPR002100Transcription factor, MADS-box
PfamPF003197.5E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGRKATVYEL ISNEYARKAT LKKRKAGLLK KLSELTTLCG VAACAIIFSS YDAQPDVWPS  60
KAEACQVLKK FKSSPAQQRG KNMMDQTVLL KRSILQLNGR LEKRKRKNRE LEKELALAET  120
MAGGNNCDWN NLEQLKELDY QLQENIKLIT NKIKG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684163.11e-110PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_017605837.11e-110PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1U8J6B51e-108A0A1U8J6B5_GOSHI; agamous-like MADS-box protein AGL80
TrEMBLA0A2P5WIK01e-108A0A2P5WIK0_GOSBA; Uncharacterized protein
STRINGGorai.009G302800.11e-105(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-17AGAMOUS-like 80