PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34090_BGI-A2_v1.0
Common NameF383_18524
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 800aa    MW: 87016.3 Da    PI: 6.7798
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34090_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.4e-095696061954
                                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 Fe   ++yps +++  LA+++gL+++qV++WF N R +
  Cotton_A_34090_BGI-A2_v1.0 569 FEHflHPYPSDADKLLLARQTGLSKNQVSNWFINARVR 606
                                 664459******************************88 PP

2BELL111.93.5e-36428500172
                        BELL   1 erqelqkkkakLlslleeV.dkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                 +r e+q++k+kLls+l+e  d+rY++y+eq+qtv++sF+ v+g g+a pYt+lA ka+SrhF+cLkdai+ q+
  Cotton_A_34090_BGI-A2_v1.0 428 DRIEHQRRKVKLLSMLDEAcDRRYNHYCEQMQTVVNSFDLVMGFGAAVPYTALAKKAMSRHFKCLKDAITAQL 500
                                 589*************9962789***********************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-74359498IPR006563POX domain
PfamPF075265.4E-48364497IPR006563POX domain
PROSITE profilePS5007112.584547610IPR001356Homeobox domain
CDDcd000864.45E-13550611No hitNo description
SMARTSM003896.6E-10550614IPR001356Homeobox domain
SuperFamilySSF466896.42E-17552617IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-28553616IPR009057Homeodomain-like
PfamPF059201.3E-17567606IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
DHEEEDIDMG IATSPVTPSI LHQIPFQEKS NHSTNSMSQD YHHQAAAGIF SFSNGFERSA  60
MSHQEQHQHQ QQQQQHLVQQ IRRDKQRVQG FEPPSLPLVG IESNALPVYE AEGMLSEMFD  120
FPTGVAASAE LLDQHVEPNY RAHRPPSNSN EWFSNRRGVV GGLGLVGESK NHDNRDTLAA  180
QQQHQQLPSI NADSAAAMNL FLMNPQPRSP SPPAPPSSSS NTLHMLLPNP STSLQGFNVS  240
GPAGGTFRTT STVLSPPQFT WVPNSAHEGD DTGSQLNNSS QIGGVIEGQG LSLSLSSSLL  300
HLEAAKAEEL RMYYNQEAGS SSAAAAQFHY KNLATHNHHN LQGGVGENHQ VHVGFGSSLG  360
MVNVIRNSKY VKAAQQLLEE FCSVGRGNFK RNKSGRNNTN PTFNLPGSNG DGGSSSSTKD  420
PPPLSTADRI EHQRRKVKLL SMLDEACDRR YNHYCEQMQT VVNSFDLVMG FGAAVPYTAL  480
AKKAMSRHFK CLKDAITAQL KHSCEALGEK DGAGNSGITM GETPRLRVLE QSLRQQRAFH  540
QMGMVEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKLLLARQTG LSKNQVSNWF  600
INARVRLWKP MVEDMYQQEI KEEDEDNNEG HNGNSAQKST PSTTAGAAAS TPSEPPPTTA  660
AAGGKRSEIN AMKNDPSLIA INRQGFSENQ AKQCTNHDTS ATNTTIIATG PPPPTTFKAT  720
ATEVAPPFSY GVDGTTTCRR GSIVSADYGT TTRPGNDSDI GSTLIRFGTT TGDVSLTLGL  780
RHAGNMPENT SSFSVRDVGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16556613158Homeobox protein Meis1
4xrs_B3e-16556613158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638117.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_017638118.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_017638119.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_017638120.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ9SW801e-156BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A1U8LFB70.0A0A1U8LFB7_GOSHI; BEL1-like homeodomain protein 4
STRINGGorai.008G070800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-153BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]