PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33861_BGI-A2_v1.0
Common NameF383_28467
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 763aa    MW: 85400.5 Da    PI: 6.5579
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33861_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.95e-20622718295
                                 EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                                 +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv+ ngL+egDf
  Cotton_A_33861_BGI-A2_v1.0 622 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDF 703
                                 79*************************999999********7778*******99777777777777.**************** PP

                                 EEEEE-SS.SEE..EEE CS
                          B3  80 vvFkldgr.sefelvvk 95 
                                 +v++  ++ ++++++++
  Cotton_A_33861_BGI-A2_v1.0 704 IVIY--SDvKCGKYLIR 718
                                 ****..55599988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-28616729IPR015300DNA-binding pseudobarrel domain
CDDcd100151.62E-37619720No hitNo description
SuperFamilySSF1019361.51E-22620714IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.687621723IPR003340B3 DNA binding domain
SMARTSM010192.5E-19621723IPR003340B3 DNA binding domain
PfamPF023624.1E-16622717IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MRGVQQQQQQ QQKMGGEDVH AVGGNEGNPS GFDDVVVEVE RVMGSEEREM WLDRQQDDEL  60
LDVNDASIFY GDFPPLPDFP CMSSSSSSSS TPAPVKAIAC SSSASTASSS SSAASWAVLK  120
SDADEDMERK NNGHHIHLHH HHHQNYIQNS HQQEHHGKVD GTPAALSSTA STEIPQPQDQ  180
NVMDGVDCMD VMENFGYMDL IDNNDLFDPS SIFHHDDTGL EEFQQDQQNQ QQQEHDSTQQ  240
QLGQQVGAMM YSKNEDQTQE EKASDDLAMV FLEWLKTNKE TVSAEDLRRV KIKKATIECA  300
ARRLGGGKEA MKQLLKLILE WVQTNHLQRR RIKESASNNQ PDHPYQYSNP NNLNSSSNPN  360
LNCNPILPSE PNSCFSQPAW VPQPAYTTDP EAAPPPLPGF TPVVGYMGDP FANGAPNVTT  420
HHHPYQPPTD YQVLDTAQTW PPSQFALAAS QYNSFADNNL HPAPLQQQPS AFPGYVNQYP  480
YHYVPGHNNN DQRLLRLGSS ATKEARKKRM ARQRRFASHH RNHGHHHNNQ QSQLQNQSID  540
QHERLVKGNC VAAAQANPGN WVYWPSVAGA LASNPPPVLP GDVTMVHPVD QPTMQGQTYQ  600
RQVATDRRQG WKPEKNLRFL LQKVLKQSDV GNLGRIVLPK KEAETHLPEL EARDGISIAM  660
EDIGTSRVWN MRYRFWPNNK SRMYLLENTG DFVRTNGLQE GDFIVIYSDV KCGKYLIRGV  720
KVRQSGTKSE TKRPGKSQKN HHTNSPSAAV NGSLPTPITQ TVK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6143371e-84JX614337.1 Gossypium hirsutum clone NBRI_GE57639 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484530.10.0PREDICTED: B3 domain-containing transcription factor ABI3 isoform X2
SwissprotQ015930.0ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLA0A0B0MR680.0A0A0B0MR68_G
STRINGPOPTR_0002s25330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102802531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.10.0B3 family protein