PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33133_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 807aa    MW: 87611.8 Da    PI: 6.9336
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33133_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-095896261954
                                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Cotton_A_33133_BGI-A2_v1.0 589 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 626
                                 664459******************************88 PP

2BELL113.31.3e-36448520172
                        BELL   1 erqelqkkkakLlslleeV.dkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                 +r e+q++k+kLls+l+e  ++rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Cotton_A_33133_BGI-A2_v1.0 448 DRIEHQRRKVKLLSMLDEAcERRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 520
                                 589*************9962689***********************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.7E-77377518IPR006563POX domain
PfamPF075261.2E-48382517IPR006563POX domain
PROSITE profilePS5007112.568567630IPR001356Homeobox domain
CDDcd000866.82E-13570631No hitNo description
SMARTSM003891.2E-9570634IPR001356Homeobox domain
SuperFamilySSF466894.19E-17572637IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-29573636IPR009057Homeodomain-like
PfamPF059204.1E-18587626IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MGIATPPLVA SILSQESQPS KKIHHQIPIQ HKSNNSTNSM SQDYHQAAGI FSFSNGFERS  60
AVSHQEHQQQ QQQHLEQQIR RDKLRVEGFE PPPPPLVGIE EEESTSLPVY ETAGMLSEMF  120
NFPSGAAAAA XPAPPATAST ELLDQHVQPN YRAHRPAPGN TNEWYSNRQG VVGGLGQLGE  180
SKSHITRDSL AQQHQQQQQL PSINADSAAA MHLFLMNPQQ RSPSPPPPPP ATSSNTLHML  240
LPNPSTSLQG FNVSGPGGGF GTSTVLSPPQ FTWVPGSAHE GGNNTDSQLS SLNEIGSVVE  300
GQGLSLSLSS SLQHLEAAKA EELRMGDGGL LYYNQGGGSA AQFHQYRNLG SHHQTMHLQG  360
GVGQNQQVHH VGFGSSLGMV NVLRNSKYVK AAQELLEEFC SVGRGQFKKN KFGRNNTNPS  420
SDPVSSGCAG GGGSSSSTKD LPPLSAADRI EHQRRKVKLL SMLDEACERR YNHYCEQMQM  480
VVNSFDLVMG FGAAVPYTAL AQKAMSRHFR CLKDAISAQL KHSCEMLGEK DGAGSSGITK  540
GETPRLRMLE QSLRQQRAFN QMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA  600
DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEEMYQQET KEEGDHNNNN NNNHTERERN  660
PNNNNNAQTS TPSTTAAPTT TTTTPAGKGS QINATENDPS LIAINTPQCF SENQANPTAT  720
EVAPPISQPF TTTIPHDSDI HHQRIAGTTV AAADYGTTAG GNTDIGSSLI RLGTTTAGDV  780
SLTLGLRHAG NMPENTSSFS VRDFGGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16576634563Homeobox protein Meis2
3k2a_B2e-16576634563Homeobox protein Meis2
4xrm_A3e-16576634563Homeobox protein Meis2
4xrm_B3e-16576634563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642203.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_017642205.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ9SW801e-178BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A1U8K8U10.0A0A1U8K8U1_GOSHI; BEL1-like homeodomain protein 4
STRINGGorai.007G207200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-163BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]