PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32425_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 283aa    MW: 32441.2 Da    PI: 6.9044
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32425_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.9e-17129218198
                                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                 f+k +++s+v+   +l lp++f++++   ++ ++++tl de+g+++  k+  +k++    l++GW++F  +++L +gD +vF+
  Cotton_A_32425_BGI-A2_v1.0 129 FVKPMLQSHVTGGFWLGLPNQFCKKNL--PHHDVMVTLVDEEGEEFVTKYLADKTG----LSGGWRGFSIDHNLVDGDALVFQ 205
                                 89*********************9994..34679****************666666....*********************** PP

                                 E-SSSEE..EEEEE- CS
                          B3  84 ldgrsefelvvkvfr 98 
                                 ++  +ef  +v ++r
  Cotton_A_32425_BGI-A2_v1.0 206 VVAPTEF--KVYIIR 218
                                 8776666..888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-21121219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-24122219IPR015300DNA-binding pseudobarrel domain
CDDcd100175.07E-26127218No hitNo description
SMARTSM010198.0E-21129220IPR003340B3 DNA binding domain
PfamPF023622.5E-15129219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAESELSYEE MRKRRLEENK KRMEELNLKG LSQALKSKSV KSSPAKPRTP RKQVELTAVR  60
RSSRVADKPK PDYKDVPLEP FERLRRGYNR GHSHRDLFNR VYASAEERAY AIERAEHLES  120
TLDSEYPSFV KPMLQSHVTG GFWLGLPNQF CKKNLPHHDV MVTLVDEEGE EFVTKYLADK  180
TGLSGGWRGF SIDHNLVDGD ALVFQVVAPT EFKVYIIRAY ESDDNGGGED EKGGEDGREE  240
EKREDEKEEK RKDGDKEADV EPDVQNRRSK RIRGSSRSSP AKP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6231885e-94JX623188.1 Gossypium hirsutum clone NBRI_GE70273 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462975.11e-174PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ1G3M32e-91Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A0D2TUN61e-174A0A0D2TUN6_G
STRINGPOPTR_0009s10590.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-72B3 family protein