PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29337_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 279aa    MW: 31686.5 Da    PI: 9.7834
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29337_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.81e-322579155
                     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  Cotton_A_29337_BGI-A2_v1.0 25 KPRLRWTADLHDRFVDAVTKLGGPNKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 79
                                79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8472282IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-312280IPR009057Homeodomain-like
SuperFamilySSF466893.23E-162582IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-242580IPR006447Myb domain, plants
PfamPF002498.3E-92778IPR001005SANT/Myb domain
PfamPF143793.6E-22124171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MERLSYGGNG NYGYENGVVM TRDPKPRLRW TADLHDRFVD AVTKLGGPNK ATPKSVLRLM  60
GLKGLTLYHL KSHLQKYRLG QQSRKQNTAD QNKENGRSSY VQFSNHSSGT VTNSPRADDD  120
KRQIQMTEVL KSQMEVQKTL EEQLEVQKKL QMRIEAQGKY LQAILEKAQK SLSFDIHSEE  180
NVEEKRAQLT NFNLPLSSLM DSTNEADRKS NMAQMNHVIP TKANFSASFH GHGVGDREEN  240
KHVKRKVEGD SINLDLNTKD SYEYGAVNGN QLQSHFVFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-192578154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-192578154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-192578154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-192578154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5780822e-71JX578082.1 Gossypium hirsutum clone NBRI_GE10029 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625659.10.0PREDICTED: myb family transcription factor PHL11-like isoform X1
RefseqXP_017625660.10.0PREDICTED: myb family transcription factor PHL11-like isoform X1
SwissprotC0SVS44e-84PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A1U8LP550.0A0A1U8LP55_GOSHI; myb family transcription factor APL-like isoform X1
STRINGGorai.004G180000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124952530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.13e-82G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]