PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28611_BGI-A2_v1.0
Common NameF383_15655
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 247aa    MW: 28314.2 Da    PI: 9.3707
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28611_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003295117223
                                 EETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                 +C+ C+++++++ +L  H +  H
  Cotton_A_28611_BGI-A2_v1.0  95 SCSVCSRVYPTSRLLSIHVSEaH 117
                                 6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.66792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003555.494117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003550.092132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAMVVDYKHD SSFPYWTSIR RRFAPDSPFF SSGNIERELL AKQVALDLTE DERNQLEKMI  60
DNDARGIFCP IVGCDARLTL LEDFEDHYNA RHTASCSVCS RVYPTSRLLS IHVSEAHDSF  120
FQAKVARGYA MYECLVEGCD LKFKNYKGRQ QHLVDKHKFP TSFEFFKKAH PSKKQRLKNQ  180
RKRAVNKKDE EASSKMEVEN EMMEGLVSAV SKLSTSDSSP STVSFGRRNA RGLTFVPRSV  240
QPPLQKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172182KKQRLKNQRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725399.10.0PREDICTED: zinc finger protein 511-like
TrEMBLA0A0B0N9T80.0A0A0B0N9T8_GOSAR; Zinc finger protein
STRINGGorai.001G271700.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-113zinc ion binding;nucleic acid binding;zinc ion binding