PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28135_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 179aa    MW: 19978.6 Da    PI: 8.7074
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28135_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001590112123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C++Cg  Fs    L  H+r+H
  Cotton_A_28135_BGI-A2_v1.0  90 HECSICGLEFSIGQALGGHMRRH 112
                                 78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.0E-844112No hitNo description
PfamPF139122.3E-124570IPR007087Zinc finger, C2H2
SMARTSM003550.314668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1594673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PfamPF139123.6E-1089114IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6690117IPR007087Zinc finger, C2H2
SMARTSM003550.3290112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKRSFASEME NNLALANCLM LLSQGRNQYD HTIFNDSNNN NPTRVFECKT CNRQFASFQA  60
LGGHRASHKK PKLLDGSSTE NQPPAKPKTH ECSICGLEFS IGQALGGHMR RHRGGLSENH  120
HQYGPLSSSS SSQEMVTTPI VKKSNSRRVL CLDLNLTPLE NDWELFKLGK AALPIDCFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457912.11e-130PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A0D2RSU31e-130A0A0D2RSU3_G
STRINGPOPTR_0008s05110.12e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-31C2H2 family protein