PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27060_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 553aa    MW: 58300.7 Da    PI: 7.2691
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27060_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.77.2e-411712753113
                         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84 
                                 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+
  Cotton_A_27060_BGI-A2_v1.0 171 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGST 253
                                 5699****************************************************************999777777777775 PP

                         TCP  85 sssg...........kaaksaakskksqksaasalnlake 113
                                  s++           +                  l+la +
  Cotton_A_27060_BGI-A2_v1.0 254 LSAPpsksaphafhgA------------------LALASH 275
                                 4444322222222220..................222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-39175279IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496176230IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MELTDLQSNK QTKNNNSSSS SNNNNNNSAE PHHQSLQQHH LQHQKQSASP QLVVPFDGTR  60
SSGPSSGNPF NMGSISHLHP HHPFHLLLHP ASSTTTTTTT PPLPSSSSSS SSSSSASTTT  120
TNPPQLVDAS LAIATRSTSH NIDSKNQTDL PLSSTTTPAS TTTTTTTANP PVKRSTKDRH  180
TKVDGRGRRI RMPATCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA TGTGTIPANF  240
STLNISLRSS GSTLSAPPSK SAPHAFHGAL ALASHHHHHH PYEEGFAHSA LLGFQQQHQQ  300
HLLTADQIAE ALPGGGGGDG GNLSESYMRK RFREDLFKDD DQQQGESGSG GGDGSPIKAF  360
KSGLTQLSKP QQDAGSSALP RPSNILPGTA MWAVAPAPSS GAGSTFWMLP MSAGAGGPSV  420
APSAATGAGP SDHPQMWPFG TANQASGNTL QAPLHFLPRF NLPGNVEFQG GRASPLQLGS  480
MLMQQQHQQQ QPHHHLGLGM SDSNLGMLAA LNAYSRGGSN VNSDQNNPLE HHHQQHQPQG  540
TDSGDDQDPN TSQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274910.0HQ527491.1 Gossypium herbaceum clone NBRI_C_7085 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623393.10.0PREDICTED: transcription factor TCP8
TrEMBLA0A0B0NV180.0A0A0B0NV18_GOSAR; Transcription factor TCP8-like protein
STRINGGorai.002G215000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.14e-59TCP family protein