PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27057_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 131aa    MW: 15252.7 Da    PI: 10.1736
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27057_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-1416981490
                                T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                          B3 14 grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                                +r+ +p k + ++    +g+ e  ++  ++de gr+W++++     ++k ++ vltkGW+eFv  ++L   D v F++d++  ++
  Cotton_A_27057_BGI-A2_v1.0 16 KRMKIPSKSL-NCfpalSGN-EHMVDFDVRDECGRVWKFRIYTrksNNKYRKPVLTKGWREFVCRKELSIDDEVEFYMDKQqADG 98
                                5799999999.445998555.46689***************444445555559************************88654444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.1363110IPR003340B3 DNA binding domain
CDDcd100179.93E-14493No hitNo description
Gene3DG3DSA:2.40.330.108.0E-16495IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-13693IPR015300DNA-binding pseudobarrel domain
PfamPF023627.0E-111697IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MATIVSKRLR KTDIEKRMKI PSKSLNCFPA LSGNEHMVDF DVRDECGRVW KFRIYTRKSN  60
NKYRKPVLTK GWREFVCRKE LSIDDEVEFY MDKQQADGSV EYRVTVQKAV KVFGAVFAHK  120
PFPGEVSNGI V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467821.13e-90PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A0D2ME763e-90A0A0D2ME76_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16920512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-10B3 family protein