PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25584_BGI-A2_v1.0
Common NameF383_26676
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 885aa    MW: 97371.2 Da    PI: 7.143
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25584_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18340439198
                                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                                 f+k l+ sd+++ grlvlpkk+ae+h   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  ++++gD+
  Cotton_A_25584_BGI-A2_v1.0 340 FEKMLSASDAGRIGRLVLPKKCAEAHfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQVQAGDV 421
                                 89**************************555566778***************9989999999***9.**************** PP

                                 EEEEE-SSSEE..EEEEE- CS
                          B3  80 vvFkldgrsefelvvkvfr 98 
                                 v+F++ +  +++lv+++++
  Cotton_A_25584_BGI-A2_v1.0 422 VTFSRLE-PGGKLVMGFRK 439
                                 ****665.77777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-29337445IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-19337439IPR015300DNA-binding pseudobarrel domain
CDDcd100179.18E-22338439No hitNo description
SMARTSM010191.7E-19340441IPR003340B3 DNA binding domain
PfamPF023621.8E-15340439IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828340441IPR003340B3 DNA binding domain
PROSITE profilePS5105014.485567617IPR011124Zinc finger, CW-type
PfamPF074961.4E-12572614IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MTSTPGAASS SKICFNSDCK DLKSEIPRKG WRLRTGEFAE LCDRCAFAFE EGRFCDTFHL  60
NASGWRTCES CGKRVHCGCI VSVHAFTLLD AGGIECVACA RKNVVMGSSS SWSPSLIFHS  120
SLSERFKEYS AKGWTQLAGS GPVPWRQAPS LFNSPVPQPE LHSRMPYEVD LSTGIDRLNV  180
CDRLSTPSLE KKKVEDFSER LMNGTLKPGT RDIHEKGSAG INCEEQHNPC LTKFQSSLKE  240
ESNPQFGLAV PYTSPDEANG QNGVSGTHLR PNPQPPLAKQ FHSNLQNGTD SSGETQIRNG  300
RPRPDGRGKN NLFPRYWPRF TDQDLQQITG DSNSVITPLF EKMLSASDAG RIGRLVLPKK  360
CAEAHFPPIS QPEGLPLKVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQNMQVQAGD  420
VVTFSRLEPG GKLVMGFRKA STASASDQDN EAKNSNGVSM HGDAEMADPT SWSKVDKSGY  480
IAKEALGAKV AVSRKRKNSM LGSKSKRLRI DNEDLIELKL TWEEAQGLLR PPPNHVASVV  540
VIEGFEFEEY EDAPILGKPT IFATDNMGEK IQWAQCEDCF KWRRLPSNVL LPSKWTCSSN  600
SWDPERSSCS VIQELTAEQL ENLLPQCNPA ASKKIKAAKQ DTENVDALEG LDTLANLAIL  660
GEGESLPTSS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCET VKRRFRTLMM  720
RREKKQSQKE AETTSKKQQT SLPDKVPDDD PPPCTNAENS SPKQIKIASE GSEDDPNRVK  780
SSISPFKGQI DLNIQPEREE ELSPGSDSGS MMRLLQDDTD KYLRQQSTLT SGGNSNSEVS  840
QTQPGGGPEG EKISNSVNLG DSHQDIDRDH PVFSIKTSAS TSATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1533942613102DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444504.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0B0MWR00.0A0A0B0MWR0_G
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-164HSI2-like 1