PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24144_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 486aa    MW: 50969.9 Da    PI: 7.9439
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24144_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.61.5e-401242292113
                         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                                 +++k++++++hTkv+gR+RR+R++a c ar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s
  Cotton_A_24144_BGI-A2_v1.0 124 PPAKRSTKDRHTKVDGRGRRIRMPAACTARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGS 206
                                 5789*****************************************************************99988888888888 PP

                         TCP  84 nsssgkaaksaakskksqksaasalnlake 113
                                 + s++       +sk++++s + al+la +
  Cotton_A_24144_BGI-A2_v1.0 207 TLSAP-------PSKSAPHSFHGALALASH 229
                                 55544.......223333333333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-37129233IPR005333Transcription factor, TCP
PROSITE profilePS5136927.59130184IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MELTYSQNNK QTNNNTNLVS SDGTTTTSSA PSSTSNNNNS PFNITSISHL HRRLLHPTTS  60
STATVITTAT PPLSSSSSSP STTKTNPAQP VDASLAIATR SSASLNIDDS TKKNQPNLPP  120
SSNPPAKRST KDRHTKVDGR GRRIRMPAAC TARVFQLTRE LGHKSDGETI EWLLQQAEPA  180
IIAATGTGTI PANFSTLNVS LRSSGSTLSA PPSKSAPHSF HGALALASHH HPYEEGFAHS  240
ALFGLHHQQQ QLLRADQIAE TLPAGGGGSG GCGNSSENYM RKRFREDLFK DDNQQQGETG  300
GGGGSGDGDS GGDGSSIKAF KTGLPQLHKP SNILPATAMW AVAPAPSSTT GSTFWMLPVT  360
TTGPSILTAA SGAGSSEPQM WPFGTASGNT LQAPLHFVPR FNLQGNLESQ GGRASPLQLG  420
SMLLQQQHQP SQHLGLGLSE SNLGMLAALN AYSRGGPNIN SDQNNPMEHH QQQGTNSGDE  480
DPNNSQ
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632285.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5181e-86TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A0D2S4290.0A0A0D2S429_GOSRA; Uncharacterized protein
TrEMBLA0A1U8MPN60.0A0A1U8MPN6_GOSHI; transcription factor TCP8-like
STRINGGorai.012G166500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.19e-78TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]