PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23932_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 343aa    MW: 38799.9 Da    PI: 7.6201
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23932_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-1062102340
                                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
                      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                                  +k +rr+++NReAAr+sR RKka++++Le    k ++Le+
  Cotton_A_23932_BGI-A2_v1.0  62 TDKIQRRLAQNREAARKSRMRKKAYVQQLESsrlKLAQLEQ 102
                                 7899**************************83333444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.2E-957109No hitNo description
SMARTSM003389.0E-960142IPR004827Basic-leucine zipper domain
PfamPF001703.6E-762100IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.2262106IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.09E-764105No hitNo description
PROSITE patternPS0003606782IPR004827Basic-leucine zipper domain
PfamPF141441.2E-28151225IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAIYEQFHHI SRWADTFNSD NSPNIGSSTI VPADVRLKNK AECIPCEQVE PSISDQETNK  60
PTDKIQRRLA QNREAARKSR MRKKAYVQQL ESSRLKLAQL EQELERARQQ GIHIAGASDA  120
GYFGLSGTVN SGITSFEMEY RHWVEEQNRL ICELRTAVQA HVTDIELRIL VESGLNHYYN  180
LFRMKADAAK ADVFYLISGI WRTSAERFFH WIGGFRPSAL LNVVVPQIEP LTDQQHLEVC  240
NLRQSSQQAE DALSQGVEKL QQSLAESVAS DLCSGNYRAQ MVAAIDKLEA LENFVSQADH  300
LRQQTLQQMA RILTARQAAR GLLAMGEYFH RLRALSSLSA ARP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430921e-127AC243092.1 Gossypioides kirkii clone GKH058K14-jmr, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612699.10.0PREDICTED: transcription factor TGA3
SwissprotQ93ZE21e-155TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A2P5W9L70.0A0A2P5W9L7_GOSBA; Uncharacterized protein
STRINGGorai.002G219800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-137bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]