PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22691_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 279aa    MW: 31422.2 Da    PI: 6.1654
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22691_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-1991183190
                                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT- CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegD 78 
                                 f+k+l++sdv++++r++lpk+ ae+h   ++++e++ + + d++g  +W++k+++  +++s++yvl+ ++ eFv+ +gL+ gD
  Cotton_A_22691_BGI-A2_v1.0  91 FQKELKNSDVSSLRRMILPKRAAEAHlpVLESKEGILINMDDLDGlHVWSFKYRFwpNNNSRMYVLE-NTGEFVSTHGLQLGD 172
                                 99**************************55666899*********9*******9989999999***9.*************** PP

                                 EEEEEE-SS.SEE CS
                          B3  79 fvvFkldgr.sef 90 
                                 f++ +   +  ++
  Cotton_A_22691_BGI-A2_v1.0 173 FIMVYQ--DsLNQ 183
                                 **9993..32444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2781199IPR015300DNA-binding pseudobarrel domain
CDDcd100179.64E-2589191No hitNo description
SuperFamilySSF1019364.12E-2189188IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.37591193IPR003340B3 DNA binding domain
SMARTSM010192.9E-1891193IPR003340B3 DNA binding domain
PfamPF023622.3E-1691186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
VAGVEGVTVE GDNTHQHPSG PSGLTRDLVA AVPSFGFNRK KRMARQRRSS STIKLLSFTN  60
NSSSSSSSSS HVPSPPLPTR VIDPKRLRFL FQKELKNSDV SSLRRMILPK RAAEAHLPVL  120
ESKEGILINM DDLDGLHVWS FKYRFWPNNN SRMYVLENTG EFVSTHGLQL GDFIMVYQDS  180
LNQNYVIQAK KASDEDVYSD IARNGVNDLF LHDYEATKSS NYYYPMMEDN GMSFIYDTTL  240
SFSNDCPLDF LGGSMTNYSR MGSLESFGSV ENLSLDEFY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144841e-124JX614484.1 Gossypium hirsutum clone NBRI_GE57891 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446172.10.0PREDICTED: B3 domain-containing transcription factor FUS3
SwissprotQ9LW311e-101FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLA0A0D2QWP10.0A0A0D2QWP1_G
STRINGPOPTR_0001s32990.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71382638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-100B3 family protein