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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_21627_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 281aa MW: 31390.7 Da PI: 7.0381 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 97.1 | 1.1e-30 | 40 | 142 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k ltpsdv+k++rlv+pk++ae++ + + ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD Cotton_A_21627_BGI-A2_v1.0 40 FEKPLTPSDVGKLNRLVIPKQHAEKYfplaaD-SVDKGLLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSKYVKEKQLDAGD 121 99***************************963.3457789******************************************* PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 +++F ++++++ +++++ +r+ Cotton_A_21627_BGI-A2_v1.0 122 IILFLRHRSDGDRFFIGCRRR 142 *****8776777778888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.8E-42 | 34 | 149 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.19E-31 | 38 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.86E-29 | 38 | 141 | No hit | No description |
PROSITE profile | PS50863 | 13.93 | 40 | 143 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-28 | 40 | 142 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-25 | 40 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MFFSSNHPSL SFNFNQHEDH SESEINPNQS HPDHGMEPMF EKPLTPSDVG KLNRLVIPKQ 60 HAEKYFPLAA DSVDKGLLLS FEDESGKFWR FRYSYWNSSQ SYVLTKGWSK YVKEKQLDAG 120 DIILFLRHRS DGDRFFIGCR RRGAPSAPAD AGNTLMGNNT SCGGGGDTRG LYHGHPYLGH 180 IQGHAANLPY RPGCLHAGSI VENEGIAAGN PRRLVRLFGV NLECQLDGSE PSTPENSSSV 240 SVSSQQGPTT HQFYNSQLSY TSNYMDITFS RDMNQMRNHQ G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-44 | 37 | 142 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012485771.1 | 0.0 | PREDICTED: B3 domain-containing protein At2g36080-like | ||||
Swissprot | Q8GYJ2 | 3e-72 | Y2608_ARATH; B3 domain-containing protein At2g36080 | ||||
TrEMBL | A0A0D2S3S0 | 0.0 | A0A0D2S3S0_G | ||||
STRING | VIT_08s0007g02810.t01 | 1e-105 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 5e-67 | B3 family protein |