PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21627_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 281aa    MW: 31390.7 Da    PI: 7.0381
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21627_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.11.1e-3040142199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                 f+k ltpsdv+k++rlv+pk++ae++     + +  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD
  Cotton_A_21627_BGI-A2_v1.0  40 FEKPLTPSDVGKLNRLVIPKQHAEKYfplaaD-SVDKGLLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSKYVKEKQLDAGD 121
                                 99***************************963.3457789******************************************* PP

                                 EEEEEE-SSSEE..EEEEE-S CS
                          B3  79 fvvFkldgrsefelvvkvfrk 99 
                                 +++F ++++++ +++++ +r+
  Cotton_A_21627_BGI-A2_v1.0 122 IILFLRHRSDGDRFFIGCRRR 142
                                 *****8776777778888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-4234149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-3138142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-2938141No hitNo description
PROSITE profilePS5086313.9340143IPR003340B3 DNA binding domain
PfamPF023626.4E-2840142IPR003340B3 DNA binding domain
SMARTSM010194.3E-2540142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MFFSSNHPSL SFNFNQHEDH SESEINPNQS HPDHGMEPMF EKPLTPSDVG KLNRLVIPKQ  60
HAEKYFPLAA DSVDKGLLLS FEDESGKFWR FRYSYWNSSQ SYVLTKGWSK YVKEKQLDAG  120
DIILFLRHRS DGDRFFIGCR RRGAPSAPAD AGNTLMGNNT SCGGGGDTRG LYHGHPYLGH  180
IQGHAANLPY RPGCLHAGSI VENEGIAAGN PRRLVRLFGV NLECQLDGSE PSTPENSSSV  240
SVSSQQGPTT HQFYNSQLSY TSNYMDITFS RDMNQMRNHQ G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-443714211117DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485771.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ23e-72Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A0D2S3S00.0A0A0D2S3S0_G
STRINGVIT_08s0007g02810.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.25e-67B3 family protein