PlantRegMap
Plant Transcription Factor Database
PlantTFDB
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18442_BGI-A2_v1.0
Common NameF383_04639
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 357aa    MW: 40585.6 Da    PI: 8.203
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18442_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.6e-1173113340
                                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
                      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                                  +k +rr+++NReAAr+sR+RKka++++Le    k ++Le+
  Cotton_A_18442_BGI-A2_v1.0  73 TDKIQRRLAQNREAARKSRLRKKAYVQQLESsrlKLAQLEQ 113
                                 7899**************************83333444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-771134IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.16373117IPR004827Basic-leucine zipper domain
PfamPF001709.8E-873111IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-775116No hitNo description
Gene3DG3DSA:1.20.5.1709.7E-876118No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
PfamPF141446.3E-29161236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSSLSTELTR RMAIYEQFHQ INKWGDTFNG EDSPKTGSST VLQVDVRLEN KAEYISSEKT  60
EPSRSDQETN KPTDKIQRRL AQNREAARKS RLRKKAYVQQ LESSRLKLAQ LEQELERARQ  120
QGLYISSAST GYFGLSAAAN AGITAFEMEY GNWVEEQNKK ICELRSALQA HITDIELRIL  180
VENSLNHYCN LFHIKADAAK ADVFYLISGI WRTTAERFFH WIGGFRPSEL LNVLMSQIEP  240
LTDQQQLEVY NLQQSSQQAE DALSQGIDRL QQNLAESVAT DLSSGNYKAQ LAAAIDKLQA  300
LEGFVKQADH LRQQTLQQMA RILTTRQAAR GLLALGEYFH RLRALSSLWS ARPREPS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643299.10.0PREDICTED: transcription factor TGA7-like
RefseqXP_017643300.10.0PREDICTED: transcription factor TGA7-like
SwissprotQ93ZE21e-164TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A0B0Q0Z80.0A0A0B0Q0Z8_GOSAR; Transcription factor TGA7-like protein
STRINGGorai.010G045700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-154bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]