PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16798_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 166aa    MW: 18958.5 Da    PI: 10.2616
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16798_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.21.2e-141151343
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                i n+  r++t+ kR +g+ KK  EL +LC++e++ ii++++
  Cotton_A_16798_BGI-A2_v1.0 11 ITNDLARKTTYKKRTKGLVKKVPELTTLCGIEACAIIYAPD 51
                                89************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.755149IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-15161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-17151IPR002100Transcription factor, MADS-box
CDDcd002668.61E-18351No hitNo description
PRINTSPR004041.6E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSRKKIKLAY ITNDLARKTT YKKRTKGLVK KVPELTTLCG IEACAIIYAP DFDSQLEVVV  60
PRECMTLAVP SSRSCPVETK QLMVNQESFL EQSLAKATQH LRKLCKENRQ KELKTTMFQS  120
LKGKWILHSL NLIDLKELGL LVKQNLKEID NRVRVLTKAR CSSGCY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618068.11e-107PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0B0NSB97e-95A0A0B0NSB9_GOSAR; Uncharacterized protein
STRINGGorai.013G168300.11e-69(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-38AGAMOUS-like 80