PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14777_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 251aa    MW: 27724.9 Da    PI: 9.1302
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14777_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20137171135
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 C+nC tt+TplWR+gp+g+k+LCnaCG+++rk+++
  Cotton_A_14777_BGI-A2_v1.0 137 CANCDTTSTPLWRNGPRGPKSLCNACGIRFRKEER 171
                                 ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF892606.54E-53796No hitNo description
SMARTSM004011.5E-18131184IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.653131167IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-13134173No hitNo description
Gene3DG3DSA:3.30.50.102.9E-16135171IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.83E-13136168No hitNo description
PfamPF003205.7E-18137171IPR000679Zinc finger, GATA-type
PROSITE patternPS003440137162IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MMRKCSSSQG DMVLGPCSCG LFHGENNSFS MLFSMPNHKS FDETDMYRFT SSSSSSVDCT  60
LSLGTPSTRL CVNDSDKRLR HGRSSGNSCV SNFCLDLLQN KNMPYPLQSA KDSRGSNGNS  120
SSNSSGKGND PLLARRCANC DTTSTPLWRN GPRGPKSLCN ACGIRFRKEE RRATNAIKSS  180
GATGSMLEQL QHLGYHHHQN KNNSRVHHSQ SLKIPCFSPV NGFRFIEDTD RDSATGISFL  240
SWRLNVHDLT R
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (including its own promoter and GATA21 promoter), thus regulating the expression of genes mostly involved in hormone responses and floral organ specification (including genes regulating hormones responses) (PubMed:23335616, PubMed:26390296). Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:15367721, PubMed:23335616). Coregulates, with AGO10/PNH, the shoot apical meristem (SAM) organization. Regulates floral organ development via the promotion of JAG and NPR5/BOP2 expression. Modulates cytokinin homeostasis in organ boundaries by regulating CKX3 expression (PubMed:26390296). Involved in cell proliferation and differentiation (PubMed:15367721). Required to position the inductive proembryo boundary via the regulation of gene expression and for early embryonic development (PubMed:20643354). Together with GIF1/AN3, mediates cotyledon identity by preventing ectopic root formation through the repression of PLT1 expression (PubMed:22669825). {ECO:0000269|PubMed:15367721, ECO:0000269|PubMed:20643354, ECO:0000269|PubMed:22669825, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:26390296}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed via a negative regulatory feedback loop. {ECO:0000269|PubMed:23335616}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164151e-139JX616415.1 Gossypium hirsutum clone NBRI_GE61057 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635870.10.0PREDICTED: GATA transcription factor 18-like
SwissprotQ8LC794e-56GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A1U8MLV40.0A0A1U8MLV4_GOSHI; GATA transcription factor 18-like isoform X2
TrEMBLA0A2P5XYI10.0A0A2P5XYI1_GOSBA; Uncharacterized protein
STRINGGorai.008G067800.11e-140(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-53GATA family protein
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]